Applications

The following applications build on kallisto:

• ARCHS4: Massive Mining of Publicly Available RNA-seq Data from Human and Mouse using kallisto

• arkas: rapid and reproducible RNA-Seq analysis for end users

• DEE2: Digital Expression Explorer 2

• Differential analysis of RNA-Seq with sleuth

• elysium : RNA-seq alignment in the cloud

• EndoDB : a database of endothelial cell transcriptomics data

• Google Cloud Pilot RNA Sequencing for CCLE and TCGA

• kallisto-sra : Nextflow implementation of kallisto RNA-Seq Tools fetching samples directly from SRA

• metaR: utilizing the Language Workbench Technology to facilitate data analysis in R

• MiPanda : Michigan Portal for the Analysis of NGS Data

• Single cell RNA-Seq preparation and analysis

• SkeletalVis : exploration of skeletal biology related expression datasets

• The Lair: interactive (re)analysis of published RNA-Seq data with kallisto and sleuth

• Toil based kallisto quantifications of GTEx and TCGA PANCAN RNA-Seq

• Wheat expression browser : kallisto based quantifications for wheat from RH Ramirez-Gonzalez, P Borrill et al., 2018.